HL_4V6I_007
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- UAAGGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_007 not in the Motif Atlas
- Homologous match to HL_4V88_194
- Geometric discrepancy: 0.498
- The information below is about HL_4V88_194
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50142.3
- Basepair signature
- cWW-cWW-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
4V6I|1|CA|U|368
4V6I|1|CA|A|369
4V6I|1|CA|A|370
4V6I|1|CA|G|371
4V6I|1|CA|G|372
4V6I|1|CA|G|373
Current chains
- Chain CA
- 18S rRNA
Nearby chains
- Chain AC
- 40S ribosomal protein rpS9 (S4p)
- Chain AE
- 40S ribosomal protein rpS2 (S5p)
- Chain AH
- 40S ribosomal protein rpS22 (S8p)
- Chain AL
- 40S ribosomal protein rpS23 (S12p)
- Chain AP
- 40S ribosomal protein rpS11 (S17p)
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