HL_4V6I_008

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CCUGAGAAACGG

Length

12 nucleotides

Bulged bases

4V6I|1|CA|A|400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_008 not in the Motif Atlas

Homologous match to HL_4V88_195

Geometric discrepancy: 0.1764

The information below is about HL_4V88_195

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_06226.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

4V6I|1|CA|C|393
4V6I|1|CA|C|394
4V6I|1|CA|U|395
4V6I|1|CA|G|396
4V6I|1|CA|A|397
4V6I|1|CA|G|398
4V6I|1|CA|A|399
4V6I|1|CA|A|400
4V6I|1|CA|A|401
4V6I|1|CA|C|402
4V6I|1|CA|G|403
4V6I|1|CA|G|404

Current chains

Chain CA

18S rRNA

Nearby chains