HL_4V6I_014

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CUAUUUUGUUGGUUUCUAG

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_014 not in the Motif Atlas

Geometric match to HL_4GXY_003

Geometric discrepancy: 0.3147

The information below is about HL_4GXY_003

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4V6I|1|CA|C|827
4V6I|1|CA|U|828
4V6I|1|CA|A|829
4V6I|1|CA|U|830
4V6I|1|CA|U|831
4V6I|1|CA|U|832
4V6I|1|CA|U|833
4V6I|1|CA|G|834
4V6I|1|CA|U|835
4V6I|1|CA|U|836
4V6I|1|CA|G|837
4V6I|1|CA|G|838
4V6I|1|CA|U|839
4V6I|1|CA|U|840
4V6I|1|CA|U|841
4V6I|1|CA|C|842
4V6I|1|CA|U|843
4V6I|1|CA|A|844
4V6I|1|CA|G|845

Current chains

Chain CA

18S rRNA

Nearby chains