HL_4V6I_017

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GAUCAGAUACC

Length

11 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_017 not in the Motif Atlas

Homologous match to HL_4V88_208

Geometric discrepancy: 0.2878

The information below is about HL_4V88_208

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

4V6I|1|CA|G|997
4V6I|1|CA|A|998
4V6I|1|CA|U|999
4V6I|1|CA|C|1000
4V6I|1|CA|A|1001
4V6I|1|CA|G|1002
4V6I|1|CA|A|1003
4V6I|1|CA|U|1004
4V6I|1|CA|A|1005
4V6I|1|CA|C|1006
4V6I|1|CA|C|1007

Current chains

Chain CA

18S rRNA

Nearby chains

Chain CB

Transfer RNA; tRNA

Chain CC

MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')

Chain DA

Large subunit ribosomal RNA; LSU rRNA