HL_4V6I_025

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GCGCUUG*C

Length

8 nucleotides

Bulged bases

4V6I|1|CA|U|1362, 4V6I|1|CA|U|1363, 4V6I|1|CA|G|1364

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_025 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.3103

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6I|1|CA|G|1358
4V6I|1|CA|C|1359
4V6I|1|CA|G|1364
4V6I|1|CA|C|1365
4V6I|1|CA|U|1362
4V6I|1|CA|U|1363
4V6I|1|CA|G|1364
*
4V6I|1|CA|C|1365

Current chains

Chain CA

18S rRNA

Nearby chains

Chain AI

40S ribosomal protein rpS16 (S9p)

Chain AS

40S ribosomal protein rpS19 (S19e)