HL_4V6I_031

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_031 not in the Motif Atlas

Homologous match to HL_4V88_222

Geometric discrepancy: 0.2537

The information below is about HL_4V88_222

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6I|1|CA|G|1778
4V6I|1|CA|U|1779
4V6I|1|CA|G|1780
4V6I|1|CA|A|1781
4V6I|1|CA|A|1782
4V6I|1|CA|C|1783

Current chains

Chain CA

18S rRNA

Nearby chains

Chain Ac

Unknown 40S ribosomal protein XS2

Chain DA

Large subunit ribosomal RNA; LSU rRNA