HL_4V6I_033
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CUUGUCGCG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_033 not in the Motif Atlas
- Homologous match to HL_6UFM_002
- Geometric discrepancy: 0.1983
- The information below is about HL_6UFM_002
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V6I|1|CB|C|31
4V6I|1|CB|U|32
4V6I|1|CB|U|33
4V6I|1|CB|G|34
4V6I|1|CB|U|35
4V6I|1|CB|C|36
4V6I|1|CB|G|37
4V6I|1|CB|C|38
4V6I|1|CB|G|39
Current chains
- Chain CB
- P-SITE TRNA ASP
Nearby chains
- Chain AI
- 40S ribosomal protein rpS16 (S9p)
- Chain CA
- Small subunit ribosomal RNA; SSU rRNA
- Chain CC
- MRNA, RNA (5'-R(P*AP*AP*AP*AP*GP*AP*CP*UP*UP*CP*A)-3')
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: