HL_4V6I_040
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- 4V6I|1|DA|G|218
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_040 not in the Motif Atlas
- Homologous match to HL_8C3A_007
- Geometric discrepancy: 0.422
- The information below is about HL_8C3A_007
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.12
- Basepair signature
- cWW-cWW-F-tWH
- Number of instances in this motif group
- 16
Unit IDs
4V6I|1|DA|G|216
4V6I|1|DA|U|217
4V6I|1|DA|G|218
4V6I|1|DA|A|219
4V6I|1|DA|G|220
4V6I|1|DA|A|221
4V6I|1|DA|A|222
4V6I|1|DA|U|223
4V6I|1|DA|C|224
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BD
- 60S ribosomal protein rpL4 (L4p)
- Chain BY
- 60S ribosomal protein rpL26 (L24p)
- Chain Bh
- 60S ribosomal protein pL32 (L32e)
- Chain DB
- 5.8S ribosomal RNA; 5.8S rRNA
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