HL_4V6I_041

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UUUGGGAAUG

Length

10 nucleotides

Bulged bases

4V6I|1|DA|A|284

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_041 not in the Motif Atlas

Homologous match to HL_8C3A_008

Geometric discrepancy: 0.1191

The information below is about HL_8C3A_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77436.2

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V6I|1|DA|U|278
4V6I|1|DA|U|279
4V6I|1|DA|U|280
4V6I|1|DA|G|281
4V6I|1|DA|G|282
4V6I|1|DA|G|283
4V6I|1|DA|A|284
4V6I|1|DA|A|285
4V6I|1|DA|U|286
4V6I|1|DA|G|287

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BO

60S ribosomal protein rpL28 (L15p)

Chain BP

60S ribosomal protein rpL15 (L15e)

Chain Br

60S ribosomal protein rpL42 (L44e)