HL_4V6I_061

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CAUGGAAGUCG

Length

11 nucleotides

Bulged bases

4V6I|1|DA|A|1245

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_061 not in the Motif Atlas

Homologous match to HL_8C3A_027

Geometric discrepancy: 0.5158

The information below is about HL_8C3A_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6I|1|DA|C|1239
4V6I|1|DA|A|1240
4V6I|1|DA|U|1241
4V6I|1|DA|G|1242
4V6I|1|DA|G|1243
4V6I|1|DA|A|1244
4V6I|1|DA|A|1245
4V6I|1|DA|G|1246
4V6I|1|DA|U|1247
4V6I|1|DA|C|1248
4V6I|1|DA|G|1249

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BJ

60S ribosomal protein rpL12 (L11p)