HL_4V6I_072

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUUUAUC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_072 not in the Motif Atlas

Geometric match to HL_4V9F_039

Geometric discrepancy: 0.1627

The information below is about HL_4V9F_039

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

4V6I|1|DA|G|1719
4V6I|1|DA|U|1720
4V6I|1|DA|U|1721
4V6I|1|DA|U|1722
4V6I|1|DA|A|1723
4V6I|1|DA|U|1724
4V6I|1|DA|C|1725

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain Bm

60S ribosomal protein rpL43 (L37ae)