HL_4V6I_078

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GCUUGC

Length

6 nucleotides

Bulged bases

4V6I|1|DA|U|2010

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_078 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1208

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

4V6I|1|DA|G|2008
4V6I|1|DA|C|2009
4V6I|1|DA|U|2010
4V6I|1|DA|U|2011
4V6I|1|DA|G|2012
4V6I|1|DA|C|2013

Current chains

Chain DA

25S rRNA

Nearby chains