HL_4V6I_079

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

UCUUGUA

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_079 not in the Motif Atlas

Geometric match to HL_3IGI_004

Geometric discrepancy: 0.3421

The information below is about HL_3IGI_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_04783.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

9

Unit IDs

4V6I|1|DA|U|2065
4V6I|1|DA|C|2066
4V6I|1|DA|U|2067
4V6I|1|DA|U|2068
4V6I|1|DA|G|2069
4V6I|1|DA|U|2070
4V6I|1|DA|A|2071

Current chains

Chain DA

25S rRNA

Nearby chains

Chain Bn

60S ribosomal protein rpL38 (L38e)