HL_4V6I_088

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AUUCAUUU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_088 not in the Motif Atlas

Geometric match to HL_7A0S_056

Geometric discrepancy: 0.2901

The information below is about HL_7A0S_056

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_04259.3

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6I|1|DA|A|2536
4V6I|1|DA|U|2537
4V6I|1|DA|U|2538
4V6I|1|DA|C|2539
4V6I|1|DA|A|2540
4V6I|1|DA|U|2541
4V6I|1|DA|U|2542
4V6I|1|DA|U|2543

Current chains

Chain DA

25S rRNA

Nearby chains

Chain AT

40S ribosomal protein rpS21 (S21e)

Chain BH

60S ribosomal protein rpL8 (L7ae)