HL_4V6I_096
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CGGAAUUUG
- Length
- 9 nucleotides
- Bulged bases
- 4V6I|1|DA|G|2777
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_096 not in the Motif Atlas
- Homologous match to HL_5TBW_060
- Geometric discrepancy: 0.3948
- The information below is about HL_5TBW_060
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_93324.1
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 26
Unit IDs
4V6I|1|DA|C|2776
4V6I|1|DA|G|2777
4V6I|1|DA|G|2778
4V6I|1|DA|A|2779
4V6I|1|DA|A|2780
4V6I|1|DA|U|2781
4V6I|1|DA|U|2782
4V6I|1|DA|U|2783
4V6I|1|DA|G|2784
Current chains
- Chain DA
- 25S rRNA
Nearby chains
- Chain BL
- 60S ribosomal protein rpL13 (L13e)
- Chain BO
- 60S ribosomal protein rpL28 (L15p)
- Chain BP
- 60S ribosomal protein rpL15 (L15e)
- Chain Br
- 60S ribosomal protein rpL42 (L44e)
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