HL_4V6I_098

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

AGCAGAAU

Length

8 nucleotides

Bulged bases

4V6I|1|DA|G|2898

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_098 not in the Motif Atlas

Homologous match to HL_5TBW_062

Geometric discrepancy: 0.3341

The information below is about HL_5TBW_062

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_79150.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

12

Unit IDs

4V6I|1|DA|A|2897
4V6I|1|DA|G|2898
4V6I|1|DA|C|2899
4V6I|1|DA|A|2900
4V6I|1|DA|G|2901
4V6I|1|DA|A|2902
4V6I|1|DA|A|2903
4V6I|1|DA|U|2904

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BF

60S ribosomal protein rpL9 (L6p)

Chain Bd

60S ribosomal protein rpL29 (L29e)

Chain Bz

Unknown protein