HL_4V6I_107

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CCUUGUUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_107 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.2937

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V6I|1|DA|C|3349
4V6I|1|DA|C|3350
4V6I|1|DA|U|3351
4V6I|1|DA|U|3352
4V6I|1|DA|G|3353
4V6I|1|DA|U|3354
4V6I|1|DA|U|3355
4V6I|1|DA|G|3356

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BZ

60S ribosomal protein rpL24 (L24e)