HL_4V6I_108
3D structure
- PDB id
- 4V6I (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.8 Å
Loop
- Sequence
- CAGCGAAAUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6I_108 not in the Motif Atlas
- Geometric match to HL_4V9F_001
- Geometric discrepancy: 0.3689
- The information below is about HL_4V9F_001
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_17803.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
4V6I|1|DB|C|47
4V6I|1|DB|A|48
4V6I|1|DB|G|49
4V6I|1|DB|C|50
4V6I|1|DB|G|51
4V6I|1|DB|A|52
4V6I|1|DB|A|53
4V6I|1|DB|A|54
4V6I|1|DB|U|55
4V6I|1|DB|G|56
Current chains
- Chain DB
- 5.8S rRNA
Nearby chains
- Chain BX
- 60S ribosomal protein rpL25 (L23p)
- Chain Bc
- 60S ribosomal protein rpL35 (L29p)
- Chain Bl
- 60S ribosomal protein rpL37 (L37e)
- Chain Bo
- 60S ribosomal protein rpL39 (L39e)
- Chain DA
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: