HL_4V6I_109

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

ACAUU

Length

5 nucleotides

Bulged bases

4V6I|1|DB|A|111, 4V6I|1|DB|U|112

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_109 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.2578

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6I|1|DB|A|109
4V6I|1|DB|C|110
4V6I|1|DB|A|111
4V6I|1|DB|U|112
4V6I|1|DB|U|113

Current chains

Chain DB

5.8S rRNA

Nearby chains

Chain BX

60S ribosomal protein rpL25 (L23p)

Chain Bl

60S ribosomal protein rpL37 (L37e)

Chain Bo

60S ribosomal protein rpL39 (L39e)

Chain DA

Large subunit ribosomal RNA; LSU rRNA