HL_4V6I_112

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GGUGAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_112 not in the Motif Atlas

Homologous match to HL_5TBW_186

Geometric discrepancy: 0.2754

The information below is about HL_5TBW_186

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

4V6I|1|DC|G|85
4V6I|1|DC|G|86
4V6I|1|DC|U|87
4V6I|1|DC|G|88
4V6I|1|DC|A|89
4V6I|1|DC|C|90

Current chains

Chain DC

5S rRNA

Nearby chains

Chain BI

60S ribosomal protein rpL10 (L10e)

Chain BS

60S ribosomal protein rpL20 (L18ae)

Chain Be

60S ribosomal protein rpL7 (L30p)

Chain DA

Large subunit ribosomal RNA; LSU rRNA