HL_4V6I_116

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

CCUCAG

Length

6 nucleotides

Bulged bases

4V6I|1|DA|C|959, 4V6I|1|DA|A|962

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_116 not in the Motif Atlas

Homologous match to HL_8P9A_134

Geometric discrepancy: 0.328

The information below is about HL_8P9A_134

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70782.2

Basepair signature

cWW-F

Number of instances in this motif group

4

Unit IDs

4V6I|1|DA|C|958
4V6I|1|DA|C|959
4V6I|1|DA|U|960
4V6I|1|DA|C|961
4V6I|1|DA|A|962
4V6I|1|DA|G|963

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BO

60S ribosomal protein rpL28 (L15p)