HL_4V6I_120

3D structure

PDB id

4V6I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Localization of the small subunit ribosomal proteins into a 6.1 A cryo-EM map of Saccharomyces cerevisiae translating 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

8.8 Å

Loop

Sequence

GUUAUCUUU

Length

9 nucleotides

Bulged bases

4V6I|1|DA|U|1682, 4V6I|1|DA|A|1683

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6I_120 not in the Motif Atlas

Geometric match to HL_8C3A_039

Geometric discrepancy: 0.2678

The information below is about HL_8C3A_039

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6I|1|DA|G|1680
4V6I|1|DA|U|1681
4V6I|1|DA|U|1682
4V6I|1|DA|A|1683
4V6I|1|DA|U|1684
4V6I|1|DA|C|1685
4V6I|1|DA|U|1686
4V6I|1|DA|U|1687
4V6I|1|DA|U|1688

Current chains

Chain DA

25S rRNA

Nearby chains

Chain BT

60S ribosomal protein rpL19 (L19e)

Chain BW

60S ribosomal protein rpL22 (L22e)