HL_4V6K_002

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GGUCUCC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_002 not in the Motif Atlas

Geometric match to HL_6D12_001

Geometric discrepancy: 0.1939

The information below is about HL_6D12_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48417.5

Basepair signature

cWW-F-F

Number of instances in this motif group

26

Unit IDs

4V6K|1|AA|G|85
4V6K|1|AA|G|86
4V6K|1|AA|U|87
4V6K|1|AA|C|88
4V6K|1|AA|U|89
4V6K|1|AA|C|90
4V6K|1|AA|C|91

Current chains

Chain AA

ribosomal RNA 5S

Nearby chains

Chain AB

Large subunit ribosomal RNA; LSU rRNA

Chain AN

50S ribosomal protein L16

Chain AW

50S ribosomal protein L25