HL_4V6K_022

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

4V6K|1|AB|A|643, 4V6K|1|AB|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_022 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.2045

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

4V6K|1|AB|U|641
4V6K|1|AB|U|642
4V6K|1|AB|A|643
4V6K|1|AB|A|644
4V6K|1|AB|C|645
4V6K|1|AB|U|646
4V6K|1|AB|G|647

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain Ad

50S ribosomal protein L33

Chain Af

50S ribosomal protein L35