HL_4V6K_029

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GGAAACAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_029 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.2033

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

4V6K|1|AB|G|977
4V6K|1|AB|G|978
4V6K|1|AB|A|979
4V6K|1|AB|A|980
4V6K|1|AB|A|981
4V6K|1|AB|C|982
4V6K|1|AB|A|983
4V6K|1|AB|A|984
4V6K|1|AB|C|985
4V6K|1|AB|C|986

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AR

50S ribosomal protein L20

Chain Aa

50S ribosomal protein L30