HL_4V6K_035

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

GUUAAUC

Length

7 nucleotides

Bulged bases

4V6K|1|AB|U|1325, 4V6K|1|AB|U|1329

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_035 not in the Motif Atlas

Geometric match to HL_7A0S_033

Geometric discrepancy: 0.1866

The information below is about HL_7A0S_033

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_49081.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

17

Unit IDs

4V6K|1|AB|G|1324
4V6K|1|AB|U|1325
4V6K|1|AB|U|1326
4V6K|1|AB|A|1327
4V6K|1|AB|A|1328
4V6K|1|AB|U|1329
4V6K|1|AB|C|1330

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AO

50S ribosomal protein L17

Chain AT

50S ribosomal protein L22