HL_4V6K_056

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

4V6K|1|AB|A|2268, 4V6K|1|AB|C|2275

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_056 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.2222

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

4V6K|1|AB|C|2264
4V6K|1|AB|U|2265
4V6K|1|AB|A|2266
4V6K|1|AB|A|2267
4V6K|1|AB|A|2268
4V6K|1|AB|G|2269
4V6K|1|AB|A|2270
4V6K|1|AB|G|2271
4V6K|1|AB|U|2272
4V6K|1|AB|A|2273
4V6K|1|AB|A|2274
4V6K|1|AB|C|2275
4V6K|1|AB|G|2276

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AN

50S ribosomal protein L16

Chain AX

50S ribosomal protein L27