HL_4V6K_092
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- GAU(2MG)(5MC)AACGC
- Length
- 10 nucleotides
- Bulged bases
- 4V6K|1|BA|A|968, 4V6K|1|BA|G|971
- QA status
- Modified nucleotides: 2MG, 5MC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6K_092 not in the Motif Atlas
- Homologous match to HL_5J7L_021
- Geometric discrepancy: 0.3718
- The information below is about HL_5J7L_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50779.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
4V6K|1|BA|G|963
4V6K|1|BA|A|964
4V6K|1|BA|U|965
4V6K|1|BA|2MG|966
4V6K|1|BA|5MC|967
4V6K|1|BA|A|968
4V6K|1|BA|A|969
4V6K|1|BA|C|970
4V6K|1|BA|G|971
4V6K|1|BA|C|972
Current chains
- Chain BA
- 16S ribosomal RNA
Nearby chains
- Chain BB
- Transfer RNA; tRNA
- Chain BE
- Transfer RNA; tRNA
- Chain BG
- 30S ribosomal protein S3
- Chain BM
- 30S ribosomal protein S9
- Chain BN
- 30S ribosomal protein S10
- Chain BQ
- 30S ribosomal protein S13
- Chain BR
- 30S ribosomal protein S14
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