HL_4V6K_099

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

CGCGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_099 not in the Motif Atlas

Homologous match to HL_4LFB_028

Geometric discrepancy: 0.2051

The information below is about HL_4LFB_028

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

4V6K|1|BA|C|1265
4V6K|1|BA|G|1266
4V6K|1|BA|C|1267
4V6K|1|BA|G|1268
4V6K|1|BA|A|1269
4V6K|1|BA|G|1270

Current chains

Chain BA

16S ribosomal RNA

Nearby chains

Chain Ab

50S ribosomal protein L31

Chain BW

30S ribosomal protein S19