HL_4V6K_111

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

4V6K|1|AB|U|958, 4V6K|1|AB|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_111 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.4864

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6K|1|AB|PSU|955
4V6K|1|AB|G|956
4V6K|1|AB|C|957
4V6K|1|AB|U|958
4V6K|1|AB|A|959
4V6K|1|AB|A|960
4V6K|1|AB|C|961
4V6K|1|AB|G|962

Current chains

Chain AB

ribosomal RNA 23S

Nearby chains

Chain AA

5S ribosomal RNA; 5S rRNA

Chain AN

50S ribosomal protein L16