HL_4V6K_115
3D structure
- PDB id
- 4V6K (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structural insights into cognate vs. near-cognate discrimination during decoding.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 8.25 Å
Loop
- Sequence
- A(PSU)UGAA(MIA)A(PSU)
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU, MIA
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6K_115 not in the Motif Atlas
- Homologous match to HL_5J8B_118
- Geometric discrepancy: 0.1826
- The information below is about HL_5J8B_118
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.4
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 54
Unit IDs
4V6K|1|BB|A|31
4V6K|1|BB|PSU|32
4V6K|1|BB|U|33
4V6K|1|BB|G|34
4V6K|1|BB|A|35
4V6K|1|BB|A|36
4V6K|1|BB|MIA|37
4V6K|1|BB|A|38
4V6K|1|BB|PSU|39
Current chains
- Chain BB
- A/T-site tRNA Phe
Nearby chains
- Chain AB
- Large subunit ribosomal RNA; LSU rRNA
- Chain BA
- Small subunit ribosomal RNA; SSU rRNA
- Chain BD
- mRNA
- Chain BP
- 30S ribosomal protein S12
Coloring options: