HL_4V6K_116

3D structure

PDB id

4V6K (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

8.25 Å

Loop

Sequence

A(PSU)UGAA(MIA)A(PSU)

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6K_116 not in the Motif Atlas

Homologous match to HL_5J8B_118

Geometric discrepancy: 0.2255

The information below is about HL_5J8B_118

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.4

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

54

Unit IDs

4V6K|1|BE|A|31
4V6K|1|BE|PSU|32
4V6K|1|BE|U|33
4V6K|1|BE|G|34
4V6K|1|BE|A|35
4V6K|1|BE|A|36
4V6K|1|BE|MIA|37
4V6K|1|BE|A|38
4V6K|1|BE|PSU|39

Current chains

Chain BE

A/T-site tRNA Phe

Nearby chains

Chain BA

Small subunit ribosomal RNA; SSU rRNA

Chain BD

mRNA

Chain BM

30S ribosomal protein S9