HL_4V6L_003

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_003 not in the Motif Atlas

Homologous match to HL_5J7L_003

Geometric discrepancy: 0.2218

The information below is about HL_5J7L_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6L|1|AA|G|158
4V6L|1|AA|G|159
4V6L|1|AA|A|160
4V6L|1|AA|A|161
4V6L|1|AA|A|162
4V6L|1|AA|C|163

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain BQ

50S ribosomal protein L19