HL_4V6L_016

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGAAGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_016 not in the Motif Atlas

Homologous match to HL_5J7L_016

Geometric discrepancy: 0.2023

The information below is about HL_5J7L_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6L|1|AA|C|726
4V6L|1|AA|G|727
4V6L|1|AA|A|728
4V6L|1|AA|A|729
4V6L|1|AA|G|730
4V6L|1|AA|G|731

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S ribosomal protein S15

Chain AV

30S ribosomal protein S18

Chain AY

30S ribosomal protein S21