HL_4V6L_069

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGUAAUAG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_069 not in the Motif Atlas

Homologous match to HL_6PRV_002

Geometric discrepancy: 0.4663

The information below is about HL_6PRV_002

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

4V6L|1|BB|C|1092
4V6L|1|BB|G|1093
4V6L|1|BB|U|1094
4V6L|1|BB|A|1095
4V6L|1|BB|A|1096
4V6L|1|BB|U|1097
4V6L|1|BB|A|1098
4V6L|1|BB|G|1099

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain AB

Transfer RNA; tRNA

Chain BJ

50S ribosomal protein L11