HL_4V6L_077

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

4V6L|1|BB|C|1493, 4V6L|1|BB|U|1497

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_077 not in the Motif Atlas

Homologous match to HL_7RQB_038

Geometric discrepancy: 0.2656

The information below is about HL_7RQB_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_46680.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

27

Unit IDs

4V6L|1|BB|G|1492
4V6L|1|BB|C|1493
4V6L|1|BB|A|1494
4V6L|1|BB|A|1495
4V6L|1|BB|A|1496
4V6L|1|BB|U|1497
4V6L|1|BB|C|1498

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BD

50S ribosomal protein L2