HL_4V6L_081

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UAGAGAAUA

Length

9 nucleotides

Bulged bases

4V6L|1|BB|A|1634

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_081 not in the Motif Atlas

Homologous match to HL_4WF9_039

Geometric discrepancy: 0.3117

The information below is about HL_4WF9_039

Detailed Annotation

GNRA with extra cWW

Broad Annotation

GNRA with extra cWW

Motif group

HL_20167.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

4V6L|1|BB|U|1629
4V6L|1|BB|A|1630
4V6L|1|BB|G|1631
4V6L|1|BB|A|1632
4V6L|1|BB|G|1633
4V6L|1|BB|A|1634
4V6L|1|BB|A|1635
4V6L|1|BB|U|1636
4V6L|1|BB|A|1637

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains