HL_4V6L_091

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

CGCCAG

Length

6 nucleotides

Bulged bases

4V6L|1|BB|C|2146, 4V6L|1|BB|A|2147

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_091 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3484

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6L|1|BB|C|2143
4V6L|1|BB|G|2144
4V6L|1|BB|C|2145
4V6L|1|BB|C|2146
4V6L|1|BB|A|2147
4V6L|1|BB|G|2148

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain AO

30S ribosomal protein S11