HL_4V6L_099

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

4V6L|1|BB|A|2406

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_099 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.2501

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

4V6L|1|BB|U|2404
4V6L|1|BB|G|2405
4V6L|1|BB|A|2406
4V6L|1|BB|A|2407
4V6L|1|BB|U|2408
4V6L|1|BB|G|2409
4V6L|1|BB|G|2410
4V6L|1|BB|A|2411
4V6L|1|BB|A|2412
4V6L|1|BB|G|2413

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BM

50S ribosomal protein L15