HL_4V6L_101

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

4V6L|1|BB|G|2529

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_101 not in the Motif Atlas

Homologous match to HL_5J7L_194

Geometric discrepancy: 0.3416

The information below is about HL_5J7L_194

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_31585.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

20

Unit IDs

4V6L|1|BB|U|2528
4V6L|1|BB|G|2529
4V6L|1|BB|A|2530
4V6L|1|BB|A|2531
4V6L|1|BB|G|2532
4V6L|1|BB|U|2533
4V6L|1|BB|A|2534
4V6L|1|BB|G|2535

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BH

50S ribosomal protein L6

Chain Bg

50S ribosomal protein L36