HL_4V6L_114

3D structure

PDB id

4V6L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structural insights into cognate vs. near-cognate discrimination during decoding.

Experimental method

ELECTRON MICROSCOPY

Resolution

13.2 Å

Loop

Sequence

(PSU)GCUAACG

Length

8 nucleotides

Bulged bases

4V6L|1|BB|U|958, 4V6L|1|BB|C|961

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6L_114 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.5317

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6L|1|BB|PSU|955
4V6L|1|BB|G|956
4V6L|1|BB|C|957
4V6L|1|BB|U|958
4V6L|1|BB|A|959
4V6L|1|BB|A|960
4V6L|1|BB|C|961
4V6L|1|BB|G|962

Current chains

Chain BB

50S ribosomal RNA 23S

Nearby chains

Chain BA

5S ribosomal RNA; 5S rRNA

Chain BN

50S ribosomal protein L16

Chain BX

50S ribosomal protein L27