HL_4V6M_033

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CAGCCUGGUAG

Length

11 nucleotides

Bulged bases

4V6M|1|AV|G|19, 4V6M|1|AV|G|20

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_033 not in the Motif Atlas

Homologous match to HL_5HR6_001

Geometric discrepancy: 0.4453

The information below is about HL_5HR6_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78347.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

8

Unit IDs

4V6M|1|AV|C|13
4V6M|1|AV|A|14
4V6M|1|AV|G|15
4V6M|1|AV|C|16
4V6M|1|AV|C|17
4V6M|1|AV|U|18
4V6M|1|AV|G|19
4V6M|1|AV|G|20
4V6M|1|AV|U|21
4V6M|1|AV|A|22
4V6M|1|AV|G|23

Current chains

Chain AV

FtsQ nascent chain

Nearby chains

Chain B8

Large subunit ribosomal RNA; LSU rRNA

Chain BF

50S ribosomal protein L5