HL_4V6M_034
3D structure
- PDB id
- 4V6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ribosome-SecYE complex in the membrane environment
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- CAUGGGGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6M_034 not in the Motif Atlas
- Geometric match to HL_4V9Q_214
- Geometric discrepancy: 0.1995
- The information below is about HL_4V9Q_214
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
4V6M|1|AV|C|32
4V6M|1|AV|A|33
4V6M|1|AV|U|34
4V6M|1|AV|G|35
4V6M|1|AV|G|36
4V6M|1|AV|G|37
4V6M|1|AV|G|38
4V6M|1|AV|U|39
4V6M|1|AV|G|40
Current chains
- Chain AV
- FtsQ nascent chain
Nearby chains
- Chain AA
- Small subunit ribosomal RNA; SSU rRNA
- Chain AI
- 30S ribosomal protein S9
- Chain AM
- 30S ribosomal protein S13
- Chain AX
- mRNA
- Chain B8
- Large subunit ribosomal RNA; LSU rRNA
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