HL_4V6M_061

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UUUAGG

Length

6 nucleotides

Bulged bases

4V6M|1|B8|U|827, 4V6M|1|B8|G|830

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_061 not in the Motif Atlas

Homologous match to HL_7RQB_025

Geometric discrepancy: 0.2193

The information below is about HL_7RQB_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53619.1

Basepair signature

cWW-F-F

Number of instances in this motif group

11

Unit IDs

4V6M|1|B8|U|826
4V6M|1|B8|U|827
4V6M|1|B8|U|828
4V6M|1|B8|A|829
4V6M|1|B8|G|830
4V6M|1|B8|G|831

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BL

50S ribosomal protein L15