HL_4V6M_063

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UGCUAACG

Length

8 nucleotides

Bulged bases

4V6M|1|B8|U|958, 4V6M|1|B8|C|961

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_063 not in the Motif Atlas

Homologous match to HL_4WF9_027

Geometric discrepancy: 0.1658

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

4V6M|1|B8|U|955
4V6M|1|B8|G|956
4V6M|1|B8|C|957
4V6M|1|B8|U|958
4V6M|1|B8|A|959
4V6M|1|B8|A|960
4V6M|1|B8|C|961
4V6M|1|B8|G|962

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B7

5S ribosomal RNA; 5S rRNA

Chain BM

50S ribosomal protein L16