HL_4V6M_067

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

4V6M|1|B8|A|1175

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_067 not in the Motif Atlas

Geometric match to HL_7A0S_007

Geometric discrepancy: 0.2921

The information below is about HL_7A0S_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

4V6M|1|B8|C|1172
4V6M|1|B8|U|1173
4V6M|1|B8|U|1174
4V6M|1|B8|A|1175
4V6M|1|B8|U|1176
4V6M|1|B8|G|1177

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BL

50S ribosomal protein L15