HL_4V6M_069
3D structure
- PDB id
- 4V6M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the ribosome-SecYE complex in the membrane environment
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 7.1 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_4V6M_069 not in the Motif Atlas
- Homologous match to HL_5J7L_165
- Geometric discrepancy: 0.1364
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
4V6M|1|B8|G|1281
4V6M|1|B8|U|1282
4V6M|1|B8|G|1283
4V6M|1|B8|A|1284
4V6M|1|B8|A|1285
4V6M|1|B8|A|1286
4V6M|1|B8|A|1287
4V6M|1|B8|G|1288
4V6M|1|B8|C|1289
Current chains
- Chain B8
- 23S RIBOSOMAL RNA
Nearby chains
- Chain B0
- 50S ribosomal protein L32
- Chain BA
- Preprotein translocase secY subunit
- Chain BN
- 50S ribosomal protein L17
- Chain BS
- 50S ribosomal protein L22
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