HL_4V6M_069

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GUGAAAAGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_069 not in the Motif Atlas

Homologous match to HL_5J7L_165

Geometric discrepancy: 0.1364

The information below is about HL_5J7L_165

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

4V6M|1|B8|G|1281
4V6M|1|B8|U|1282
4V6M|1|B8|G|1283
4V6M|1|B8|A|1284
4V6M|1|B8|A|1285
4V6M|1|B8|A|1286
4V6M|1|B8|A|1287
4V6M|1|B8|G|1288
4V6M|1|B8|C|1289

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain B0

50S ribosomal protein L32

Chain BA

Preprotein translocase secY subunit

Chain BN

50S ribosomal protein L17

Chain BS

50S ribosomal protein L22