HL_4V6M_082

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

4V6M|1|B8|A|1780, 4V6M|1|B8|U|1781, 4V6M|1|B8|U|1782, 4V6M|1|B8|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_082 not in the Motif Atlas

Homologous match to HL_4WF9_043

Geometric discrepancy: 0.2194

The information below is about HL_4WF9_043

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

4V6M|1|B8|U|1777
4V6M|1|B8|U|1778
4V6M|1|B8|U|1779
4V6M|1|B8|A|1780
4V6M|1|B8|U|1781
4V6M|1|B8|U|1782
4V6M|1|B8|A|1783
4V6M|1|B8|A|1784
4V6M|1|B8|A|1785
4V6M|1|B8|A|1786
4V6M|1|B8|A|1787

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain AZ

Cell division protein FtsQ

Chain B2

50S ribosomal protein L34

Chain B6

50S ribosomal protein L2