HL_4V6M_092

3D structure

PDB id

4V6M (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the ribosome-SecYE complex in the membrane environment

Experimental method

ELECTRON MICROSCOPY

Resolution

7.1 Å

Loop

Sequence

GGUCGGACAUC

Length

11 nucleotides

Bulged bases

4V6M|1|B8|G|2308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_4V6M_092 not in the Motif Atlas

Geometric match to HL_8VTW_010

Geometric discrepancy: 0.1202

The information below is about HL_8VTW_010

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

4V6M|1|B8|G|2303
4V6M|1|B8|G|2304
4V6M|1|B8|U|2305
4V6M|1|B8|C|2306
4V6M|1|B8|G|2307
4V6M|1|B8|G|2308
4V6M|1|B8|A|2309
4V6M|1|B8|C|2310
4V6M|1|B8|A|2311
4V6M|1|B8|U|2312
4V6M|1|B8|C|2313

Current chains

Chain B8

23S RIBOSOMAL RNA

Nearby chains

Chain BF

50S ribosomal protein L5