3D structure

PDB id
4V6M (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the ribosome-SecYE complex in the membrane environment
Experimental method
ELECTRON MICROSCOPY
Resolution
7.1 Å

Loop

Sequence
UGAAUGGAAG
Length
10 nucleotides
Bulged bases
4V6M|1|B8|A|2406
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_4V6M_096 not in the Motif Atlas
Homologous match to HL_7A0S_058
Geometric discrepancy: 0.22
The information below is about HL_7A0S_058
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_53454.2
Basepair signature
cWW-tSH-F-F-F-F-F
Number of instances in this motif group
6

Unit IDs

4V6M|1|B8|U|2404
4V6M|1|B8|G|2405
4V6M|1|B8|A|2406
4V6M|1|B8|A|2407
4V6M|1|B8|U|2408
4V6M|1|B8|G|2409
4V6M|1|B8|G|2410
4V6M|1|B8|A|2411
4V6M|1|B8|A|2412
4V6M|1|B8|G|2413

Current chains

Chain B8
23S RIBOSOMAL RNA

Nearby chains

Chain BL
50S ribosomal protein L15

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.159 s